shake_topGOtableResult: Convert a topGOtableResult object

In federicomarini/GeneTonic: Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis

Convert a topGOtableResult object

Description

Convert a topGOtableResult object for straightforward use in GeneTonic()

Usage

shake_topGOtableResult(obj, p_value_column = "p.value_elim")

Arguments

obj	A topGOtableResult object
p_value_column	Character, specifying which column the p value for enrichment has to be used. Example values are "p.value_elim" or "p.value_classic"

Value

A data.frame compatible for use in GeneTonic() as res_enrich

See Also

Other shakers: shake_davidResult(), shake_enrichResult(), shake_enrichrResult(), shake_fgseaResult(), shake_gprofilerResult(), shake_gsenrichResult()

Examples

# res_enrich object
data(res_enrich_macrophage, package = "GeneTonic")

res_enrich <- shake_topGOtableResult(topgoDE_macrophage_IFNg_vs_naive)

federicomarini/GeneTonic documentation built on Oct. 10, 2024, 8:49 p.m.