styleColorBar_divergent: Style DT color bars

In federicomarini/GeneTonic: Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis

Style DT color bars

Description

Style DT color bars for values that diverge from 0.

Usage

styleColorBar_divergent(data, color_pos, color_neg)

Arguments

data	The numeric vector whose range will be used for scaling the table data from 0-100 before being represented as color bars. A vector of length 2 is acceptable here for specifying a range possibly wider or narrower than the range of the table data itself.
color_pos	The color of the bars for the positive values
color_neg	The color of the bars for the negative values

Details

This function draws background color bars behind table cells in a column, width the width of bars being proportional to the column values and the color dependent on the sign of the value.

A typical usage is for values such as log2FoldChange for tables resulting from differential expression analysis. Still, the functionality of this can be quickly generalized to other cases - see in the examples.

The code of this function is heavily inspired from styleColorBar, and borrows at full hands from an excellent post on StackOverflow - https://stackoverflow.com/questions/33521828/stylecolorbar-center-and-shift-left-right-dependent-on-sign/33524422#33524422

Value

This function generates JavaScript and CSS code from the values specified in R, to be used in DT tables formatting.

Examples

data(res_de_macrophage, package = "GeneTonic")
res_df <- mosdef::deresult_to_df(res_macrophage_IFNg_vs_naive)
library("magrittr")
library("DT")
DT::datatable(res_df[1:50, ],
  options = list(
    pageLength = 25,
    columnDefs = list(
      list(className = "dt-center", targets = "_all")
    )
  )
) %>%
  formatRound(columns = c("log2FoldChange"), digits = 3) %>%
  formatStyle(
    "log2FoldChange",
    background = styleColorBar_divergent(
      res_df$log2FoldChange,
      scales::alpha("navyblue", 0.4),
      scales::alpha("darkred", 0.4)
    ),
    backgroundSize = "100% 90%",
    backgroundRepeat = "no-repeat",
    backgroundPosition = "center"
  )


simplest_df <- data.frame(
  a = c(rep("a", 9)),
  value = c(-4, -3, -2, -1, 0, 1, 2, 3, 4)
)

# or with a very simple data frame
DT::datatable(simplest_df) %>%
  formatStyle(
    "value",
    background = styleColorBar_divergent(
      simplest_df$value,
      scales::alpha("forestgreen", 0.4),
      scales::alpha("gold", 0.4)
    ),
    backgroundSize = "100% 90%",
    backgroundRepeat = "no-repeat",
    backgroundPosition = "center"
  )

federicomarini/GeneTonic documentation built on Dec. 21, 2024, 10:05 p.m.