topgoDE_macrophage_IFNg_vs_naive: A sample 'res_enrich' object
In federicomarini/GeneTonic: Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis
topgoDE_macrophage_IFNg_vs_naive R Documentation
A sample res_enrich object
Description
A sample res_enrich object, generated with the topGOtable function (from
the pcaExplorer package).
Details
This res_enrich object on the data from the macrophage package
has been created by analyzing downstream the differentially expressed genes
when comparing IFNg treated samples vs naive samples, accounting
for the different cell lines included.
Details on how this object has been created are included in the create_gt_data.R
script, included in the scripts folder of the GeneTonic package.
References
Alasoo, et al. "Shared genetic effects on chromatin and gene
expression indicate a role for enhancer priming in immune response",
Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7.
See Also
Other pathway-analysis-results:
enrichr_output_macrophage,
gostres_macrophage
federicomarini/GeneTonic documentation built on Oct. 10, 2024, 8:49 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| topgoDE_macrophage_IFNg_vs_naive | R Documentation |
A sample res_enrich object
Description
A sample res_enrich object, generated with the topGOtable function (from
the pcaExplorer package).
Details
This res_enrich object on the data from the macrophage package
has been created by analyzing downstream the differentially expressed genes
when comparing IFNg treated samples vs naive samples, accounting
for the different cell lines included.
Details on how this object has been created are included in the create_gt_data.R
script, included in the scripts folder of the GeneTonic package.
References
Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7.
See Also
Other pathway-analysis-results:
enrichr_output_macrophage,
gostres_macrophage
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.