Files in federicomarini/flowcatchR

Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells

.Rbuildignore

.github/workflows/R-CMD-check.yaml

CODE_OF_CONDUCT.md

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/AllClasses.R R/AllGenerics.R R/auxiliary.R R/flowcatchR-pkg.R R/kinematics.R R/postprocessing.R R/preprocessing.R R/show-methods.R R/tracking.R R/trajectories.R README.md

_pkgdown.yml

data/MesenteriumSubset.RData

data/candidate.platelets.RData

docs/404.html

docs/CODE_OF_CONDUCT.html

docs/LICENSE-text.html

docs/articles/flowcatchr_vignette.html

docs/articles/flowcatchr_vignette_files/crosstalk-1.2.0/css/crosstalk.min.css

docs/articles/flowcatchr_vignette_files/crosstalk-1.2.0/js/crosstalk.js

docs/articles/flowcatchr_vignette_files/crosstalk-1.2.0/js/crosstalk.js.map

docs/articles/flowcatchr_vignette_files/crosstalk-1.2.0/js/crosstalk.min.js

docs/articles/flowcatchr_vignette_files/crosstalk-1.2.0/js/crosstalk.min.js.map

docs/articles/flowcatchr_vignette_files/crosstalk-1.2.0/scss/crosstalk.scss

docs/articles/flowcatchr_vignette_files/figure-html/allVelos-1.png

docs/articles/flowcatchr_vignette_files/figure-html/checkSelection-1.png

docs/articles/flowcatchr_vignette_files/figure-html/inspectPlatelets-1.png

docs/articles/flowcatchr_vignette_files/figure-html/inspectRaw-1.png

docs/articles/flowcatchr_vignette_files/figure-html/inspectSegm-1.png

docs/articles/flowcatchr_vignette_files/figure-html/inspectTrajs-1.png

docs/articles/flowcatchr_vignette_files/figure-html/overviewTrajs-1.png

docs/articles/flowcatchr_vignette_files/figure-html/snapExample-1.png

docs/articles/flowcatchr_vignette_files/figure-html/traj11-1.png

docs/articles/flowcatchr_vignette_files/htmlwidgets-1.6.2/htmlwidgets.js

docs/articles/flowcatchr_vignette_files/plotly-binding-4.10.1/plotly.js

docs/articles/flowcatchr_vignette_files/plotly-htmlwidgets-css-2.11.1/plotly-htmlwidgets.css

docs/articles/flowcatchr_vignette_files/plotly-main-2.11.1/plotly-latest.min.js

docs/articles/flowcatchr_vignette_files/typedarray-0.1/typedarray.min.js

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Frames-class.html

docs/reference/Frames.html

docs/reference/KinematicsFeatures-class.html

docs/reference/KinematicsFeaturesSet-class.html

docs/reference/LinkedParticleSet-class.html

docs/reference/MesenteriumSubset.html

docs/reference/ParticleSet-class.html

docs/reference/Rplot001.png

docs/reference/TrajectorySet-class.html

docs/reference/add.contours.html

docs/reference/addParticles.html

docs/reference/axesInfo.html

docs/reference/candidate.platelets.html

docs/reference/channel.Frames.html

docs/reference/computeMSD.html

docs/reference/crop.Frames.html

docs/reference/export.Frames.html

docs/reference/export.particles.html

docs/reference/extractKinematics.traj.html

docs/reference/flowcatchR-pkg.html

docs/reference/flowcatchR.html

docs/reference/index.html

docs/reference/initialize.LinkedParticleSet.html

docs/reference/inspect.Frames.html

docs/reference/kinematics.html

docs/reference/length.Frames.html

docs/reference/link.particles.html

docs/reference/matchTrajToParticles.html

docs/reference/normalizeFrames.html

docs/reference/particles.html

docs/reference/penaltyFunctionGenerator.html

docs/reference/plot.TrajectorySet.html

docs/reference/plot2D.TrajectorySet-1.png

docs/reference/plot2D.TrajectorySet.html

docs/reference/preprocess.Frames.html

docs/reference/read.Frames.html

docs/reference/read.particles.html

docs/reference/repmat.html

docs/reference/rotate.Frames.html

docs/reference/select.Frames.html

docs/reference/select.particles.html

docs/reference/shinyFlow.html

docs/reference/show-Frames-method.html

docs/reference/show-KinematicsFeatures-method.html

docs/reference/show-KinematicsFeaturesSet-method.html

docs/reference/show-LinkedParticleSet-method.html

docs/reference/show-ParticleSet-method.html

docs/reference/show-TrajectorySet-method.html

docs/reference/snap-1.png

docs/reference/snap.html

docs/reference/toCartesianCoords.html

docs/reference/toPolarCoords.html

docs/reference/trajectories.html

docs/sitemap.xml

inst/CITATION

inst/extdata/snapExp.jpg

inst/extdata/template_DetectionOfTransmigrationEvents.ipynb

inst/extdata/template_flowcatchR_vignetteSummary.ipynb

inst/shiny/ABOUT.md inst/shiny/server.R inst/shiny/ui.R

inst/shiny/www/logo_bioconductor.gif

inst/shiny/www/logo_unimedizin.png

man/Frames-class.Rd man/Frames.Rd man/KinematicsFeatures-class.Rd man/KinematicsFeaturesSet-class.Rd man/LinkedParticleSet-class.Rd man/MesenteriumSubset.Rd man/ParticleSet-class.Rd man/TrajectorySet-class.Rd man/add.contours.Rd man/addParticles.Rd man/axesInfo.Rd man/candidate.platelets.Rd man/channel.Frames.Rd man/computeMSD.Rd man/crop.Frames.Rd man/export.Frames.Rd man/export.particles.Rd man/extractKinematics.traj.Rd man/flowcatchR-pkg.Rd man/initialize.LinkedParticleSet.Rd man/inspect.Frames.Rd man/kinematics.Rd man/length.Frames.Rd man/link.particles.Rd man/matchTrajToParticles.Rd man/normalizeFrames.Rd man/particles.Rd man/penaltyFunctionGenerator.Rd man/plot.TrajectorySet.Rd man/plot2D.TrajectorySet.Rd man/preprocess.Frames.Rd man/read.Frames.Rd man/read.particles.Rd man/repmat.Rd man/rotate.Frames.Rd man/select.Frames.Rd man/select.particles.Rd man/shinyFlow.Rd man/show-Frames-method.Rd man/show-KinematicsFeatures-method.Rd man/show-KinematicsFeaturesSet-method.Rd man/show-LinkedParticleSet-method.Rd man/show-ParticleSet-method.Rd man/show-TrajectorySet-method.Rd man/snap.Rd man/toCartesianCoords.Rd man/toPolarCoords.Rd man/trajectories.Rd

vignettes/flowcatchR.bib

vignettes/flowcatchr_vignette.Rmd

federicomarini/flowcatchR documentation built on March 27, 2024, 3:29 p.m.