penaltyFunctionGenerator: Generate a penalty function

In federicomarini/flowcatchR: Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells

Generate a penalty function

Description

A function to generate penalty functions to use while linking particles

Usage

penaltyFunctionGenerator(
  epsilon1 = 0.1,
  epsilon2 = 2,
  lambda1 = 1,
  lambda2 = 1
)

Arguments

epsilon1	A numeric value, to be used in the formula. Jitter for allowing angular displacements
epsilon2	A numeric value, to be used in the formula. Jitter for allowing spatial displacements
lambda1	A numeric value. Multiplicative factor for the penalty function
lambda2	A numeric value. Multiplicative factor applied to the angular displacement

Value

A function object, to be used as penalty function

Author(s)

Federico Marini, [e-mail], 2014

Examples

custom.function <- penaltyFunctionGenerator(epsilon1=0.1,epsilon2=6,lambda1=1.5,lambda2=0)

federicomarini/flowcatchR documentation built on March 27, 2024, 3:29 p.m.