nano_seq_cov: Genome coverage of nanopore run Takes in the...
In felixgrunberger/nanoRaw: Nanopore sequencing summary visualization in R

Genome coverage of nanopore run Takes in the 'sequencing_summary' file of albacore and the genome fasta as input and returns the genome coverage

1	nano_seq_cov(inputfile, genome_fasta, quality = 0)

`inputfile`	Filepath to sequencing_summary.txt output of albacore
`genome_fasta`	path to genome fasta
`quality`	Mean quality filter option for every read

Genome coverage = Nr of bases sequenced/genome length

felixgrunberger/nanoRaw documentation built on May 22, 2019, 2:23 p.m.

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