nano_seq_vs_exon: Read length direct RNA seq vs expected transcript length...
In felixgrunberger/nanoRaw: Nanopore sequencing summary visualization in R
Description
Usage
Arguments
Value
View source: R/nanoRaw_scripts.R
Description
Read length direct RNA seq vs expected transcript length
Takes in the 'sequencing_summary' file of albacore as input and a gff3 annotation file and returns a comparison of read length vs transcript length
Usage
1
nano_seq_vs_exon(inputfile, gff_file, quality = 0)
Arguments
inputfile
Filepath to sequencing_summary.txt output of albacore
gff_file
path to gff3 annotation file
quality
Mean quality filter option for every read
Value
comparison of read_length vs transcript length
felixgrunberger/nanoRaw documentation built on May 22, 2019, 2:23 p.m.
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Description Usage Arguments Value
View source: R/nanoRaw_scripts.R
Description
Read length direct RNA seq vs expected transcript length Takes in the 'sequencing_summary' file of albacore as input and a gff3 annotation file and returns a comparison of read length vs transcript length
Usage
1 | nano_seq_vs_exon(inputfile, gff_file, quality = 0)
|
Arguments
inputfile |
Filepath to sequencing_summary.txt output of albacore |
gff_file |
path to gff3 annotation file |
quality |
Mean quality filter option for every read |
Value
comparison of read_length vs transcript length
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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