View source: R/tree_findAncestor.R
findAncestor | R Documentation |
findAncestor
finds the ancestor in the nth generation above
specified nodes.
findAncestor(tree, node, level, use.alias = FALSE)
tree |
A phylo object |
node |
A vector of node numbers or node labels |
level |
A vector of numbers to define nth generation before the specified nodes |
use.alias |
A logical value, TRUE or FALSE. The default is FALSE, and
the node label would be used to name the output; otherwise, the alias of
node label would be used to name the output. The alias of node label is
created by adding a prefix |
A vector of nodes. The numeric value is the node number, and the
vector name is the corresponding node label. If a node has no label, it
would have NA as name when use.alias = FALSE
, and have the alias of
node label as name when use.alias = TRUE
.
Ruizhu Huang
library(ggtree)
data(tinyTree)
ggtree(tinyTree, branch.length = 'none') +
geom_text2(aes(label = label), color = "darkorange",
hjust = -0.1, vjust = -0.7) +
geom_text2(aes(label = node), color = "darkblue",
hjust = -0.5, vjust = 0.7)
findAncestor(tree = tinyTree, node = c(18, 13), level = 1)
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