Files in fionarhuang/TreeSummarizedExperiment
TreeSummarizedExperiment: a S4 Class for Data with Tree Structures
.Rbuildignore
.github/workflows/Codecov.yml
.github/workflows/R-CMD-check.yml
.gitignore
DESCRIPTION
NAMESPACE
R/TreeSummarizedExperiment.R
R/aboutLoop.R
R/aggTSE.R
R/allClass.R
R/allGenerics.R
R/changeTree.R
R/classAccessor.R
R/classValid.R
R/coercion.R
R/combine.R
R/data.R
R/deprecate_Fun.R
R/internal_utils.R
R/makeTSE.R
R/tree_addLabel.R
R/tree_asLeaf.R
R/tree_asPhylo.R
R/tree_convertNode.R
R/tree_countLeaf.R
R/tree_countNode.R
R/tree_distNode.R
R/tree_findAncestor.R
R/tree_findChild.R
R/tree_findDescendant.R
R/tree_findSibling.R
R/tree_isLeaf.R
R/tree_joinNode.R
R/tree_matTree.R
R/tree_printNode.R
R/tree_shareNode.R
R/tree_showNode.R
R/tree_toTree.R
R/tree_trackNode.R
R/tree_unionLeaf.R
R/updateObject.R
README.md
data/tinyTree.RData
inst/CITATION
man/LinkDataFrame-class.Rd
man/LinkDataFrame-constructor.Rd
man/TreeSummarizedExperiment-accessor.Rd
man/TreeSummarizedExperiment-class.Rd
man/TreeSummarizedExperiment-combine.Rd
man/TreeSummarizedExperiment-constructor.Rd
man/TreeSummarizedExperiment-internal.Rd
man/TreeeSummarizedExperiment-package.Rd
man/addLabel.Rd
man/aggTSE.Rd
man/aggValue.Rd
man/asLeaf.Rd
man/asPhylo.Rd
man/changeTree.Rd
man/convertNode.Rd
man/countLeaf.Rd
man/countNode.Rd
man/detectLoop.Rd
man/distNode.Rd
man/dot-all_equal_in_list.Rd
man/dot-all_have_DNAStringSet.Rd
man/dot-all_have_DNAStringSetList.Rd
man/dot-all_nonnull_in_list.Rd
man/dot-all_null_in_list.Rd
man/dot-any_null_in_list.Rd
man/dot-auto_rename_list.Rd
man/dot-bind_link_tree.Rd
man/dot-is_equal_link.Rd
man/dot-match_phylo.Rd
man/dot-match_phylo_list.Rd
man/dot-match_x_dupY.Rd
man/dot-name_y_with_x.Rd
man/dot-numeric_ij.Rd
man/dot-rbind_refSeq.Rd
man/dot-replace_link_tree_1d.Rd
man/dot-subset_leaf.Rd
man/dot-update_whichTree.Rd
man/findAncestor.Rd
man/findChild.Rd
man/findDescendant.Rd
man/findSibling.Rd
man/isLeaf.Rd
man/joinNode.Rd
man/makeTSE.Rd
man/matTree.Rd
man/phylo.Rd
man/printNode.Rd
man/resolveLoop.Rd
man/shareNode.Rd
man/showNode.Rd
man/tinyTree.Rd
man/toTree.Rd
man/trackNode.Rd
man/unionLeaf.Rd
man/updateObject-TreeSummarizedExperiment-method.Rd
tests/testthat.R
tests/testthat/test-Accessor-Constructor-subset.R
tests/testthat/test-Accessor-Constructor.R
tests/testthat/test_addLabel.R
tests/testthat/test_aggTSE.R
tests/testthat/test_asPhylo.R
tests/testthat/test_changeTree.R
tests/testthat/test_combine.R
tests/testthat/test_dimTree.R
tests/testthat/test_subsetByLeaf.R
tests/testthat/test_subsetByNode.R
tests/testthat/test_tree.R
tests/testthat/test_tree_asLeaf.R
tests/testthat/test_tree_convertNode.R
tests/testthat/test_tree_findDescendant.R
tests/testthat/test_tree_isLeaf.R
tests/testthat/test_tree_matTree.R
tests/testthat/test_tree_setters.R
tests/testthat/test_tree_toTree.R
vignettes/Introduction_to_treeSummarizedExperiment.Rmd
vignettes/The_combination_of_multiple_TSEs.Rmd
vignettes/TreeSE_vignette.bib
vignettes/tse.png
vignettes/tse.svg
vignettes/tse2.png
vignettes/tse2.svg
