Man pages for fionarhuang/TreeSummarizedExperiment
TreeSummarizedExperiment: a S4 Class for Data with Tree Structures

aggValuePerform data aggregations based on the available tree...
countLeafcount the number of leaf nodes
countNodecount the number of nodes
distNodeCalculate the distance between any two nodes on the tree
dot-checkLDF'validLDF' is to valid a 'LinkDataFrame' object.
dot-checkTSEvalid TreeSummarizedExperiment class
findAncestorFind the ancestors of specified nodes
findOSFind descendants (or offsprings)
findSiblingfind the sibling node
isLeafTo test whether the specified nodes are leaf nodes
LinkDataFrame-classLinkDataFrame: A S4 class extended from DataFrame An S4 class...
LinkDataFrame-constructorConstruct a LinkDataFrame Construct a LinkDataFrame object
matTreeTransform a phylo object into a matrix.
phylophylo: A S3 class for the phylogenetic tree
printNodeTo print out the node labels
pruneTreeremove branches of a phylo tree
shareNodeFind the share node
signalNodefind the optimal nodes to short result.
tinyTreeA simulated phylogenetic tree with 10 tips and 9 internal...
toTreeTranslate a data frame to a phylo object
trackNodetrack the nodes of a phylo tree
transNodeTransfer between node number and node label
TreeSummarizedExperiment-accessorTreeSummarizedExperiment-accessors
TreeSummarizedExperiment-classAn S4 class TreeSummarizedExperiment
TreeSummarizedExperiment-constructorConstruct a TreeSummarizedExperiment object
fionarhuang/TreeSummarizedExperiment documentation built on June 4, 2019, 4:06 p.m.