API for fionarhuang/TreeSummarizedExperiment
TreeSummarizedExperiment: a S4 Class for Data with Tree Structures

Global functions
.add_inner_label Source code
.add_leaf_label Source code
.aggFun Source code
.agg_assay Source code
.agg_col Source code
.agg_row Source code
.all_equal_in_list Man page Source code
.all_have_DNAStringSet Man page Source code
.all_have_DNAStringSetList Man page Source code
.all_nonnull_in_list Man page Source code
.all_null_in_list Man page Source code
.any_null_in_list Man page Source code
.assign_node Source code
.auto_rename_list Man page Source code
.bind_link_tree Man page Source code
.capture_last_noNA Source code
.convert_to_edges Source code
.diffPath Source code
.drop_link Source code
.is_equal_link Man page Source code
.lack_whichTree Source code
.linkFun Source code
.match_phylo Man page Source code
.match_phylo_list Man page Source code
.match_x_dupY Man page Source code
.move_na_to_end Source code
.name_y_with_x Man page Source code
.numeric_ij Man page Source code
.rbind_refSeq Man page Source code
.rep_df Source code
.replace_link_tree_1d Man page Source code
.replace_link_tree_2d Source code
.replace_tree Source code
.replace_with_nodeID Source code
.samePath Source code
.sce_to_tse Source code
.set_referenceSeq Source code
.solveLoop Source code
.unique_or_na Source code
.update_link_tree Source code
.update_whichTree Man page Source code
LinkDataFrame Man page Source code
LinkDataFrame-class Man page
LinkDataFrame-constructor Man page
TreeSummarizedExperiment Man page Source code
TreeSummarizedExperiment-accessor Man page
TreeSummarizedExperiment-class Man page
TreeSummarizedExperiment-combine Man page
TreeSummarizedExperiment-constructor Man page
TreeSummarizedExperiment-internal Man page
TreeeSummarizedExperiment-package Man page
[,TreeSummarizedExperiment,ANY,ANY,ANY-method Man page
[<-,TreeSummarizedExperiment,ANY,ANY,TreeSummarizedExperiment-me Man page
addLabel Man page Source code
aggTSE Man page Source code
aggValue Man page Source code
asLeaf Man page Source code
asPhylo Man page Source code
cbind,TreeSummarizedExperiment-method Man page
changeTree Man page Source code
colLinks Man page
colLinks,TreeSummarizedExperiment-method Man page
colTree Man page
colTree,TreeSummarizedExperiment-method Man page
colTree<- Man page
colTree<-,TreeSummarizedExperiment-method Man page
colTreeNames Man page
colTreeNames,TreeSummarizedExperiment-method Man page
colTreeNames<- Man page
colTreeNames<-,TreeSummarizedExperiment-method Man page
colnames<-,TreeSummarizedExperiment-method Man page
convertNode Man page Source code
countLeaf Man page Source code
countNode Man page Source code
detectLoop Man page Source code
distNode Man page Source code
findAncestor Man page Source code
findChild Man page Source code
findDescendant Man page Source code
findOS Man page Source code
findSibling Man page Source code
isLeaf Man page Source code
joinNode Man page Source code
makeTSE Man page Source code
matTree Man page Source code
phylo Man page
printNode Man page Source code
rbind,TreeSummarizedExperiment-method Man page
referenceSeq Man page
referenceSeq,TreeSummarizedExperiment-method Man page
referenceSeq<- Man page
referenceSeq<-,TreeSummarizedExperiment-method Man page
resolveLoop Man page Source code
rowLinks Man page
rowLinks,TreeSummarizedExperiment-method Man page
rowTree Man page
rowTree,TreeSummarizedExperiment-method Man page
rowTree<- Man page
rowTree<-,TreeSummarizedExperiment-method Man page
rowTreeNames Man page
rowTreeNames,TreeSummarizedExperiment-method Man page
rowTreeNames<- Man page
rowTreeNames<-,TreeSummarizedExperiment-method Man page
rownames<-,TreeSummarizedExperiment-method Man page
shareNode Man page Source code
showNode Man page Source code
signalNode Man page Source code
subsetByNode Man page
subsetByNode,TreeSummarizedExperiment-method Man page
tinyTree Man page
toTree Man page Source code
trackNode Man page Source code
transNode Man page Source code
unionLeaf Man page Source code
updateObject,TreeSummarizedExperiment-method Man page
vertical_slot_names,TreeSummarizedExperiment-method Man page
fionarhuang/TreeSummarizedExperiment documentation built on June 16, 2021, 2:11 p.m.