HomosapienDEE2_QC_WARN_Raw: Automatically created ergonomic accessor functions

In flaviusb/homosapienDEE2CellScore: Example Data Package for CellScore

Automatically created ergonomic accessor functions

Description

Accessor functions for retrieving the data associated with this data package from ExperimentHub. Each of these functions downloads the container file and then returns a path to it. This file can be rehydrated into a SummarizedExperiment by using 'readInSEZip'. Usually you would want to actually use 'downloadAllTheData' instead of using any of these functions.

Details

• HomosapienDEE2_QC_WARN_Raw Raw data including data that has quality control warnings

• HomosapienDEE2_QC_PASS_Raw Raw data without any quality control warnings

• HomosapienDEE2_QC_WARN_Rank Rank normalised data including data that has quality control warnings

• HomosapienDEE2_QC_PASS_Rank Rank normalised data without any quality control warnings

• HomosapienDEE2_QC_WARN_Agg Aggregated data including data that has quality control warnings

• HomosapienDEE2_QC_PASS_Agg Aggregated data without any quality control warnings

• HomosapienDEE2_QC_WARN_Deseq2 Deseq2 normalised data that has quality control warnings

• HomosapienDEE2_QC_PASS_Deseq2 Deseq2 normalised data without any quality control warnings

Value

These functions return a path to the downloaded container file.

See Also

readInSEZip

downloadAllTheData

Examples

# The ExperimentHub metadata for the Deseq2 normalised data that passes QC is downloadable like so
the_metadata <- HomosapienDEE2_QC_PASS_Deseq2(metadata=TRUE)

# Or to download all of the data for the Deseq2 normalised data that passes QC do the following
#the_data <- HomosapienDEE2_QC_PASS_Deseq2()

flaviusb/homosapienDEE2CellScore documentation built on April 11, 2024, 1:47 p.m.