readInSEZip: readInSEZip read a SummarizedExperiment in from a zip file
In flaviusb/homosapienDEE2CellScore: Example Data Package for CellScore

View source: R/buildAll.R

readInSEZip

R Documentation

readInSEZip read a SummarizedExperiment in from a zip file

Description

This function reads in a SummarizedExperiment from a Zip file generated by writeOutSEZip. It is designed for getting an intact SummarizedExperiment out of ExperimentHub for a data package, so it extracts the intermediate csvs into a temporary folder to get the data into the datastructure.

Usage

readInSEZip(zip_name = "SE_out.zip")

Arguments

zip_name

The path to a zip file containing a SummarizedExperiment

Value

A SummarizedExperiment object.

Examples

# We can read in a small SummarizedExperiment containing a
# subset of the built data stored directly in the package like so
small_data <- readInSEZip(
  system.file("ASmallSummarizedExperiment.zip", package="homosapienDEE2CellScore"))

flaviusb/homosapienDEE2CellScore documentation built on April 11, 2024, 1:47 p.m.