downloadAllTheData: downloadAllTheData in SummarizedExperiment format

In flaviusb/homosapienDEE2CellScore: Example Data Package for CellScore

downloadAllTheData in SummarizedExperiment format

Description

This is a helper function to download all of the processed data from figshare and unpack it into a tagged list of SummarizedExperiment objects.

Usage

downloadAllTheData()

Value

A named list of SummarizedExperiment objects. The names correspond to the kinds of filtering and processing that object has undergone. The names and what they correspond to are:

• HomosapienDEE2_QC_WARN_Raw Raw data including data that has quality control warnings

• HomosapienDEE2_QC_PASS_Raw Raw data without any quality control warnings

• HomosapienDEE2_QC_WARN_Rank Rank normalised data including data that has quality control warnings

• HomosapienDEE2_QC_PASS_Rank Rank normalised data without any quality control warnings

• HomosapienDEE2_QC_WARN_Agg Aggregated data including data that has quality control warnings

• HomosapienDEE2_QC_PASS_Agg Aggregated data without any quality control warnings

• HomosapienDEE2_QC_WARN_Deseq2 Deseq2 normalised data that has quality control warnings

• HomosapienDEE2_QC_PASS_Deseq2 Deseq2 normalised data without any quality control warnings

Examples

# To download all of the preprocessed data from figshare via ExperimentHub, run:

#the_data <- homosapienDEE2CellScore::downloadAllTheData()

flaviusb/homosapienDEE2CellScore documentation built on April 11, 2024, 1:47 p.m.