API for flow-r/ngsflows
Robust Pipelines for Next-Generation Sequencing Analysis; A Companion Package for flowr
| Global functions | |
|---|---|
| annotate | Man page |
| annotate_mutect | Man page |
| annotate_variants | Man page |
| annotate_vcf | Man page |
| avail_genomes | Man page |
| bwa | Man page |
| bwa.backtrack | Man page |
| bwa.mem | Man page |
| check_fastq_sheet | Man page |
| chipseq | Man page |
| chk_fq | Man page |
| create_fq_sheet | Man page |
| create_sample_sheet | Man page |
| fastqc | Man page |
| fetch_genomes | Man page |
| get_fasta_chrs | Man page |
| get_fq_ext | Man page |
| haplotyper | Man page |
| merge_sheets | Man page |
| modules | Man page |
| mutect | Man page |
| parse_somatic_vcf | Man page |
| parse_vcf | Man page |
| picard_bam_fastq | Man page |
| picard_merge | Man page |
| picard_reorder | Man page |
| picard_rg | Man page |
| preprocess | Man page |
| samtools_sort_index | Man page |
| split_fq | Man page |
| split_names_fastq | Man page |
| split_names_fastq2 | Man page |
| star | Man page |
| star.2.4.2a | Man page |
| star_index | Man page |
