create_fq_sheet: create a sheet of fastq

In flow-r/ngsflows: Robust Pipelines for Next-Generation Sequencing Analysis; A Companion Package for flowr

Description

create a sheet of fastq

Usage

create_fq_sheet(x, ext = opts_flow$get("fastq_extension"),
  format = opts_flow$get("fastq_format"), sample_prefix = "")

Arguments

x	path to a fastq folder
ext	extensions to look for. A regex to search for fastq files
format	auto detect. Pattern specify pattern acceptable to split_fastq_names. If missing will detect hiseq and miseq
sample_prefix	A prefix to add to all sample names, run, project etc.....

flow-r/ngsflows documentation built on May 16, 2019, 1:25 p.m.