create_fq_sheet: create a sheet of fastq

Description Usage Arguments

Description

create a sheet of fastq

Usage

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create_fq_sheet(x, ext = opts_flow$get("fastq_extension"),
  format = opts_flow$get("fastq_format"), sample_prefix = "")

Arguments

x

path to a fastq folder

ext

extensions to look for. A regex to search for fastq files

format

auto detect. Pattern specify pattern acceptable to split_fastq_names. If missing will detect hiseq and miseq

sample_prefix

A prefix to add to all sample names, run, project etc.....


flow-r/ngsflows documentation built on May 16, 2019, 1:25 p.m.