Description Usage Arguments
annotate_mutect
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annotate_mutect(x, odir, oprefix, tumorBAM, normalBAM, organism = "human", build, annovarPath = "/scratch/iacs/apps/annovar/latest", protocols_g, protocols_f, full = FALSE, chrom = "contig", start = "position", end = "position", ref = "ref_allele", alt = "alt_allele", use_uuid = TRUE)
x
a mutect file
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