annotate_mutect: annotate_mutect

Description Usage Arguments

Description

annotate_mutect

Usage

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annotate_mutect(x, odir, oprefix, tumorBAM, normalBAM, organism = "human",
  build, annovarPath = "/scratch/iacs/apps/annovar/latest", protocols_g,
  protocols_f, full = FALSE, chrom = "contig", start = "position",
  end = "position", ref = "ref_allele", alt = "alt_allele",
  use_uuid = TRUE)

Arguments

x

a mutect file


flow-r/ngsflows documentation built on May 16, 2019, 1:25 p.m.