R/chromploid.R

In fmichonneau/chromploid: Chromosome Number and Ploidy Evolution Models

#' chromploid A package that calculates likelihood for chromosome number or ploidy change models in a phylogeny.
#'
#'The chromploid package builds Q matrices that allow for calculation of likelihoods and profile likelihoods for parameters of chromosomal and ploidy change
#'
#' @section chromploid functions:
#' negloglikelihood
#' Q_bichrom  
#' Q_bibichrom
#' Q_unibichrom
#' Q_reducedbichrom
#' bichrom_dataset
#' Q_ploidevol
#' Q_uniploidevol
#' Q_biploidevol
#' ploidevol_dataset
#' stationary_ploidevol
#' negloglikelihood
#' 
#' @docType package
#' @name chromploid
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