dot-cons2matrix: Create matrix from consensus sequence
In fmicompbio/monaLisa: Binned Motif Enrichment Analysis and Visualization
.cons2matrix R Documentation
Create matrix from consensus sequence
Description
Given a nucleotide sequence of A,C,G,T letter corresponding
to a motif's consensus string, construct a positional frequency matrix.
This matrix can for example be used as the profileMatrix argument
in the constructor for a TFBSTools::PFMatrix object.
Usage
.cons2matrix(x, n = 100L)
Arguments
x
Character scalar with the motif the consensus sequence.
n
Integer scalar giving the columns sums in the constructed
matrix (number of observed bases at each position).
Value
A positional frequency matrix.
fmicompbio/monaLisa documentation built on Nov. 2, 2024, 1:33 p.m.
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| .cons2matrix | R Documentation |
Create matrix from consensus sequence
Description
Given a nucleotide sequence of A,C,G,T letter corresponding
to a motif's consensus string, construct a positional frequency matrix.
This matrix can for example be used as the profileMatrix argument
in the constructor for a TFBSTools::PFMatrix object.
Usage
.cons2matrix(x, n = 100L)
Arguments
x |
Character scalar with the motif the consensus sequence. |
n |
Integer scalar giving the columns sums in the constructed matrix (number of observed bases at each position). |
Value
A positional frequency matrix.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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