plotBinScatter: Scatter plot (xy-plot) of binned elements.

In fmicompbio/monaLisa: Binned Motif Enrichment Analysis and Visualization

Scatter plot (xy-plot) of binned elements.

Description

Plot a scatter (xy-plot) of binned elements with binning information.

Usage

plotBinScatter(
  x,
  y,
  b,
  cols = NULL,
  xlab = deparse(substitute(x, env = as.environment(-1))),
  ylab = deparse(substitute(y, env = as.environment(-1))),
  main = "",
  legendPosition = "right",
  legend = NULL,
  legend.cex = NULL,
  ...
)

Arguments

x	A numerical vector with x values.
y	A numerical vector with y values (the values used for binning).
b	A factor that groups elements of x,y into bins (typically the output of bin(y)).
cols	NULL or a color vector defining the colors of points. If NULL, the colors will be computed based on b using getColsByBin(b)).
xlab	Label for x-axis.
ylab	Label for y-axis.
main	Main title.
legendPosition	A character scalar. If not "none", draw a legend with binning information. The value is used to control the legend position and will be passed to theme(legend.position = legendPosition).
legend	Deprecated (ignored). Please use legendPosition to control the drawing and position of the legend.
legend.cex	Deprecated (ignored). You can use theme to set legend and other graphical parameters.
...	Further arguments passed to getColsByBin (only used if cols is NULL).

Value

The generated scatter plot as a ggplot object.

See Also

bin, getColsByBin, geom_point

Examples

set.seed(1)
x <- rnorm(100)
y <- rnorm(100)
b <- bin(y, "equalN", nElements = 10)
plotBinScatter(x, y, b)

fmicompbio/monaLisa documentation built on June 15, 2025, 1:50 p.m.