findHomer: Find HOMER script file.
In fmicompbio/monaLisa: Binned Motif Enrichment Analysis and Visualization
View source: R/motif_enrichment_HOMER.R
findHomer R Documentation
Find HOMER script file.
Description
Find absolute path to HOMER script file.
Usage
findHomer(homerfile = "findMotifsGenome.pl", dirs = NULL)
Arguments
homerfile
Name of the script file to search.
dirs
Directory names to look for homerfile. If
dirs=NULL, all directories listed in the PATH environment
variable will be searched.
Details
In addition to dirs, findHomer will also look in the
directory provided in the environment variable MONALISA_HOMER.
Value
Absolute path to homerfile, or NA if none or several
were found.
Examples
homer_path <- findHomer()
fmicompbio/monaLisa documentation built on July 10, 2024, 8:44 a.m.
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View source: R/motif_enrichment_HOMER.R
| findHomer | R Documentation |
Find HOMER script file.
Description
Find absolute path to HOMER script file.
Usage
findHomer(homerfile = "findMotifsGenome.pl", dirs = NULL)
Arguments
homerfile |
Name of the script file to search. |
dirs |
Directory names to look for |
Details
In addition to dirs, findHomer will also look in the
directory provided in the environment variable MONALISA_HOMER.
Value
Absolute path to homerfile, or NA if none or several
were found.
Examples
homer_path <- findHomer()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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