prepare_data: Process raw data to suitable forms

In fmsan51/blvibmjp: Individual Based Model of Bovine Leukemia Virus Spread in a Dairy Herd in Japan

Description

Process raw data to suitable forms to use in simulation.

Usage

prepare_data(
  excel,
  param,
  output = F,
  cow_data = NULL,
  area_data = NULL,
  movement_data = NULL,
  cow_output_file = NULL,
  area_output_file = NULL,
  movement_output_file = NULL,
  sep = "[,\t\r\n |;:]+",
  seed = NULL,
  ...
)

Arguments

excel	Set this or cow_data, area_data and movement_data.
param	See param.
output	When TRUE, create output csv files with names of "cow.csv", "area.csv" and "movement.csv" into a working directory. Shorthand form of setting "xxx.csv" to xxx_output_file.
cow_data	See prepare_cows() for detail.
area_data	See prepare_area() for detail.
movement_data	See prepare_movement() for detail.
cow_output_file, area_output_file, movement_output_file	If not NULL, created data is exported to the files with these names (must be csv files).
sep	Separatator used in capacity column of area data. See prepare_area() for detail.
seed	Seed for a simulation.
...	Other arguments passed to prepare_cows().

Value

csv files which can be used as an input for simulate_blv_spread().

fmsan51/blvibmjp documentation built on Sept. 2, 2020, 9:04 p.m.