redefine_route_levels: Redefine infection routes

In fmsan51/blvibmjp: Individual Based Model of Bovine Leukemia Virus Spread in a Dairy Herd in Japan

Description

Recategorize cause_infection column in a cow_table.

Usage

redefine_route_levels(
  cows,
  drop,
  language = NULL,
  route_levels = NULL,
  route_labels = NULL,
  gather = T
)

Arguments

cows	See cow_table.
drop	Drop infection routes not in csv or cows from a legend. Ignored when route_levels is specified.
language	Language to which translate messages. At present, only English and Japanese is implemented.
route_levels	If specified, infection routes not specified in route_levels are coarced into "other" category. See cause_infection in cow_table to know about default categories.
route_labels	Specify if you want to rename categories.
gather	Whether infection routes as "tie_exposed_baseline", "tie_exposed_risk", "tie_non_exposed" and "free" should be gathered to one category "insects" or treated as-is.

Value

A cow_table with recategorized cause_infection.

fmsan51/blvibmjp documentation built on Sept. 2, 2020, 9:04 p.m.