DebrisFilter: the Debris class

In fomotis/cyanoFilter: Phytoplankton Population Identification using Cell Pigmentation and/or Complexity

Description

the Debris class

constructor for the DebrisFilter class

Usage

DebrisFilter(
  fullflowframe,
  reducedflowframe,
  deb_pos,
  syn_all_pos,
  deb_cut,
  ch_chlorophyll,
  ch_p2
)

DebrisFilter(
  fullflowframe,
  reducedflowframe,
  deb_pos,
  syn_all_pos,
  deb_cut,
  ch_chlorophyll,
  ch_p2
)

Arguments

fullflowframe	same as the input flowFrame
reducedflowframe	a partial flowframe containing non-margin events
deb_pos	number of margin particles measured
syn_all_pos	number of non-margine particles
deb_cut	estimated inflection point between debris and good cells
ch_chlorophyll	channel estimating chlorophyll level
ch_p2	plotting channel

Value

object of class DebrisFilter

Slots

fullflowframe

object of class "flowFrame" same as the input flowFrame

reducedflowframe

object of class "flowFrame" a partial flowframe containing a proportion of the measured particles

deb_pos

object of class "numeric" representing the proportion of particles in each cluster

syn_all_pos

object of class "numeric" representing the number of particles in each cluster

deb_cut

object of class "numeric" representing the inflection point between debris and good cells.

ch_chlorophyll

objet of class "character" representing the chlorophyll channel.

ch_p2

object of class character to plot

fomotis/cyanoFilter documentation built on Aug. 1, 2021, 10:58 p.m.