rowNumbers: returns the position of the cells below, above or between...

In fomotis/cyanoFilter: Phytoplankton Population Identification using Cell Pigmentation and/or Complexity

Description

returns the position of the cells below, above or between estimated gates

Usage

rowNumbers(flowframe, gates, ch)

Arguments

flowframe	after debris are removed.
gates	cut point between the identified clusters
ch	gated channel

Value

a numeric vector

Examples

flowfile_path <- system.file("extdata", "B4_18_1.fcs", 
                  package = "cyanoFilter",
              mustWork = TRUE)
flowfile <- flowCore::read.FCS(flowfile_path, alter.names = TRUE,
                               transformation = FALSE, emptyValue = FALSE,
                               dataset = 1) 
flowfile_nona <- cyanoFilter::noNA(x = flowfile)
flowfile_noneg <- cyanoFilter::noNeg(x = flowfile_nona)
flowfile_logtrans <- cyanoFilter::lnTrans(x = flowfile_noneg, 
c('SSC.W', 'TIME'))
oneDgate(flowfile, 'RED.B.HLin')

fomotis/cyanoFilter documentation built on Aug. 1, 2021, 10:58 p.m.