reducedFlowframe-MarginEvents-method: accesor method for reduced flowframe (MarginEvent class)

In fomotis/cyanoFilter: Phytoplankton Population Identification using Cell Pigmentation and/or Complexity

Description

accesor method for reduced flowframe (MarginEvent class)

Usage

## S4 method for signature 'MarginEvents'
reducedFlowframe(x)

Arguments

x	an object of class MarginEvents

Value

reduced Flowframe method for MarginEvents

Examples

flowfile_path <- system.file("extdata", "B4_18_1.fcs", 
                  package = "cyanoFilter",
              mustWork = TRUE)
flowfile <- flowCore::read.FCS(flowfile_path, alter.names = TRUE,
                               transformation = FALSE, emptyValue = FALSE,
                               dataset = 1) 
flowfile_nona <- cyanoFilter::noNA(x = flowfile)
flowfile_noneg <- cyanoFilter::noNeg(x = flowfile_nona)
flowfile_logtrans <- cyanoFilter::lnTrans(x = flowfile_noneg, 
c('SSC.W', 'TIME'))
cells_nonmargin <- cellMargin(flowframe = flowfile_logtrans, 
Channel = 'SSC.W',
           type = 'estimate', y_toplot = "FSC.HLin")
reducedFlowframe(cells_nonmargin)

fomotis/cyanoFilter documentation built on Aug. 1, 2021, 10:58 p.m.