blastChange: blastChange

In foster-gabe/PFExpTools: Tools for analysis of Plasmodium falciparum gene expression data

Description

This function is...elaborate. It requires blast be installed and be in your PATH. This function takes your platform data file and your annotated transcriptome file and actually creates a blast database, searches all probes against it, and identifies hits that are unique and maximal (depending on your match and secondary match parameters.) It's called from nameChange.

Usage

blastChange(platdata, platform, transcripts, match, secmatch)

Arguments

platdata	see nameChange
platform	curated data from nameChange
transcripts	see nameChange
match	see nameChange
secmatch	see nameChange

Value

see nameChange

foster-gabe/PFExpTools documentation built on May 25, 2020, 7:22 a.m.