tcImpute: tcImpute

In foster-gabe/PFExpTools: Tools for analysis of Plasmodium falciparum gene expression data

Description

This function calls the bnstruct package "knn.impute" function to perform k nearest neighbor imputation on a time course to fill in missing data.

Usage

tcImpute(expdata, neighbors = 5)

Arguments

expdata	This is an expression matrix with rows as genes and columns as samples in a time course. Time points missing data should be inserted as columns in the correct place containing NAs.
neighbors	This is the number of neighbors used in determining value.

Value

This fucntion returns the expression matrix with blank columns filled with imputed values.

foster-gabe/PFExpTools documentation built on May 25, 2020, 7:22 a.m.