remLowCoverage: remLowCoverage

In foster-gabe/PFExpTools: Tools for analysis of Plasmodium falciparum gene expression data

Description

Removes any gene from the expression dataset that does not have values in a minimum percentage of samples.

Usage

remLowCoverage(expdata, mincov, faillist = F)

Arguments

expdata	This is a matrix containing expression values' rows must be genes and columns must be samples.
mincov	This is the minimum percent coverage; probes must appear in at least this percentage of samples to pass QC.
faillist	Default is FALSE; if TRUE, function returns a list containing both the curated expression matrix and a list of genes that failed QC.

Value

This function returns an expression matrix with the genes that do not pass QC removed.

foster-gabe/PFExpTools documentation built on May 25, 2020, 7:22 a.m.