peakPhase: peakPhase

In foster-gabe/PFExpTools: Tools for analysis of Plasmodium falciparum gene expression data

Description

peakPhase

Usage

peakPhase(expdata, times, method = "poly")

Arguments

expdata	This must be an expression matrix, with rows as genes and columns as samples. Sample names (column names) must match sample names in the "times" parameter.
times	This must be a matrix with one column; the column is actual sampling time, and the row names are the sample names.
method	This allows the user to choose the method for peak time detemination; current options are "poly"(default), "sin", "spline", and "FFT". Note, FFT will only work on evenly sampled time courses (or evenly imputed time courses).

Value

This function returns a data frame with a single column; the row names are the gene names, and the column contains the time at which the gene is calculated to express maximally.

foster-gabe/PFExpTools documentation built on May 25, 2020, 7:22 a.m.