logtransform: LogTransform
In foster-gabe/PFExpTools: Tools for analysis of Plasmodium falciparum gene expression data
Description
Usage
Arguments
Value
Description
If your microarray data isn't log2 ratio transformed, use this. This will takeyour expression data and log2 ratio normalize it to a set of gene averages you provide.
Usage
1
LogTransform(newdata, refavg)
Arguments
newdata
This is the data to be normalized; this must be a numeric matrix with rows as genes and columns as samples.
refavg
This is the list of gene averages across a time course; must be a data frame with 1 column, with row names as genes.
Value
This function returns a matrix in an identical format to newdata, with all cells being log2 ratio transformed.
foster-gabe/PFExpTools documentation built on May 25, 2020, 7:22 a.m.
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Description Usage Arguments Value
Description
If your microarray data isn't log2 ratio transformed, use this. This will takeyour expression data and log2 ratio normalize it to a set of gene averages you provide.
Usage
1 | LogTransform(newdata, refavg)
|
Arguments
newdata |
This is the data to be normalized; this must be a numeric matrix with rows as genes and columns as samples. |
refavg |
This is the list of gene averages across a time course; must be a data frame with 1 column, with row names as genes. |
Value
This function returns a matrix in an identical format to newdata, with all cells being log2 ratio transformed.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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