co_apex: Calculate the co-apex score for every protein pair

Description Usage Arguments Value Examples

View source: R/co_apex.R

Description

Calculate the co-apex score for every pair of proteins. This is defined as the minimum Euclidean distance between any two Gaussians fit to each profile.

Usage

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co_apex(gaussians, proteins = NULL)

Arguments

gaussians

a list of Gaussian mixture models fit to the profile matrix by link{build_gaussians}

proteins

all proteins being scored, optionally including those without Gaussian fits

Value

a matrix of co-apex scores

Examples

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data(scott_gaussians)
gauss <- scott_gaussians[seq_len(25)]
CA <- co_apex(gauss)

fosterlab/PrInCE-R documentation built on Dec. 11, 2020, 3:51 p.m.