co_apex: Calculate the co-apex score for every protein pair
In fosterlab/PrInCE-R: Predicting Interactomes from Co-Elution
Description
Usage
Arguments
Value
Examples
Description
Calculate the co-apex score for every pair of proteins. This is defined as
the minimum Euclidean distance between any two Gaussians fit to each
profile.
Usage
1
Arguments
gaussians
a list of Gaussian mixture models fit to the profile matrix
by link{build_gaussians}
proteins
all proteins being scored, optionally including those
without Gaussian fits
Value
a matrix of co-apex scores
Examples
1
2
3
data(scott_gaussians)
gauss <- scott_gaussians[seq_len(25)]
CA <- co_apex(gauss)
fosterlab/PrInCE-R documentation built on Dec. 11, 2020, 3:51 p.m.
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Description Usage Arguments Value Examples
Description
Calculate the co-apex score for every pair of proteins. This is defined as the minimum Euclidean distance between any two Gaussians fit to each profile.
Usage
1 |
Arguments
gaussians |
a list of Gaussian mixture models fit to the profile matrix
by |
proteins |
all proteins being scored, optionally including those without Gaussian fits |
Value
a matrix of co-apex scores
Examples
1 2 3 | data(scott_gaussians)
gauss <- scott_gaussians[seq_len(25)]
CA <- co_apex(gauss)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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