threshold_precision: Threshold interactions at a given precision cutoff
In fosterlab/PrInCE-R: Predicting Interactomes from Co-Elution

Description Usage Arguments Value Examples

Threshold interactions at a given precision cutoff

1	threshold_precision(interactions, threshold)

`interactions`	the ranked list of interactions output by `predict_interactions`, including a `precision` column
`threshold`	the minimum precision of the unweighted interaction network to return

the subset of the original ranked list at the given precision

data(scott)
data(scott_gaussians)
data(gold_standard)
# analyze only the first 100 profiles
subset <- scott[seq_len(500), ]
gauss <- scott_gaussians[names(scott_gaussians) %in% rownames(subset)]
ppi <- PrInCE(subset, gold_standard,
  gaussians = gauss, models = 1,
  cv_folds = 3
)
network <- threshold_precision(ppi, threshold = 0.5)
nrow(network)