loglikelihood: function to calculate log likelihood of pars for a tree set,

In franciscorichter/emphasis: Evolutionary Modeling on Phylogenetic Applications with Simulations and Importance Sampling

function to calculate log likelihood of pars for a tree set,

Description

function to calculate log likelihood of pars for a tree set,

Usage

loglikelihood(pars, trees, logg, plugin, num_rejected)

Arguments

pars	vector of parameter values
trees	list of trees, e.g. a multiPhylo object
logg	vector of logg values
plugin	name of used plugin
num_rejected	number of rejected trees

Value

list with the following entries:

• logflogf values

• log_wlog of weight

• fhatfhat values

• Nnumber of trees

franciscorichter/emphasis documentation built on Feb. 19, 2024, 7:36 p.m.