View source: R/simulation_tree_pd.R
sim_tree_pd_cpp | R Documentation |
super fast function to simulate the process of diversification with diversity dependence and phylogenetic diversity dependence
sim_tree_pd_cpp(pars, max_t, max_lin = 1e+06, max_tries = 100, useDDD = TRUE)
pars |
parameter vector with c(mu, lambda_0, beta_N, beta_P) |
max_t |
crown age |
max_lin |
number of lineages past which non-extinction is assumed. |
max_tries |
maximum number of tries to get a non-extinct tree. |
list with: 1) tes - reconstructed tree, 2) tas - tree with extinct lineages, 3) L = Ltable and 4) brts - branching times of the reconstructed tree and 5) status of simulation, options 1) "extinct", 2) "too_large" or 3) "done".
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