API for franciscorichter/emphasis
Expectation Maximization on PHylogenetic Applications with Simulations and Importance Sampling

Global functions
AIC_llik Source code
AICw Source code
M_step Source code
Q_approx Source code
augment_tree Source code
compphyl Source code
corr_pars Source code
data_to_table Source code
emphasis Man page Source code
emphasis_diagnostics Source code
expectedLTT Man page
extinction_rate Source code
get.time Source code
get_contributing_trees Source code
get_required_sampling_size Source code
ind.rpd5 Source code
intensity.numerical Source code
intensity.numerical2 Source code
intensity.rpd1 Source code
intensity.rpd5c Source code
lambda.ldpd Source code
lambda.rpd1 Source code
lambda.rpd5c Source code
loglik.tree Man page Source code
loglik.tree.numerical Source code
loglik.tree.rpd1 Source code
loglik.tree.rpd5c Source code
ltt_stat Source code
mcEM Man page Source code
mcE_step Source code
n_from_time Source code
n_spec Source code
n_spec_r Source code
nh_rate Source code
nh_rate_T Source code
phylo2tree Source code
phylo2vectors Man page
phylodiversity Source code
sample_size_determination Source code
sampling_prob Source code
sim.tree_rpd1 Source code
sim.tree_rpd5c Source code
sim_brts_bootstrap Source code
simulation_analysis Source code
speciation_rate Source code
tree2phylo Source code
vectors2phylo Man page Source code
franciscorichter/emphasis documentation built on May 5, 2020, 2:31 a.m.