sim_tree_pd_R: simulation function to simulate a tree under the pd model,...

In franciscorichter/emphasis: Evolutionary Modeling on Phylogenetic Applications with Simulations and Importance Sampling

simulation function to simulate a tree under the pd model, returns the full tree.

Description

super fast function to simulate the process of diversification with diversity dependence and phylogenetic diversity dependence

Usage

sim_tree_pd_R(pars, max_t)

Arguments

pars	parameter vector with c(mu, lambda_0, beta_N, beta_P)
max_t	crown age

Value

a list with the phylogeny, and a vector with population size, time of extinction (equal to the crown #' age in the absence of extinction), and the phylogenetic diversity at the time of extinction (or crown age).

franciscorichter/emphasis documentation built on Jan. 6, 2025, 7:06 p.m.