Files in frhl/genoppi-v4
genoppi
.DS_Store
.Rapp.history
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/.DS_Store
R/add_genoppi_trace.R
R/add_hover_lines_volcano.R
R/add_layout_html_axes.R
R/add_line_unity.R
R/add_markers_search.R
R/append_to_column.R
R/calc_fisher.R
R/calc_hyper.R
R/calc_mod_ttest.R
R/check_input.R
R/collapse_labels.R
R/data.R
R/draw_genoppi_venn.R
R/enumerate_replicate_combinations.R
R/get_gene_lists.R
R/get_gwas_lists.R
R/get_inweb_list.R
R/get_pathways.R
R/get_snp_lists.R
R/id_enriched_proteins.R
R/launch_genoppi.R
R/make_interactive.R
R/map_gene_id.R
R/misc.R
R/modify_ggplot_from_overlay.R
R/plot_overlay.R
R/plot_scatter_basic.R
R/plot_volcano_basic.R
R/read_input.R
R/set_names_by_dataset.R
R/stop_invalid.R
R/subset_snp_loci.R
R/theme_genoppi.R
R/to_overlay_data.R
R/validate_reference.R
R/venn_to_table.R
README.md
codecov.yml
data/.DS_Store
data/accession_gene_table.rda
data/example_data.rda
data/genes_snps.rda
data/gnomad_table.rda
data/goa_bp_table.rda
data/goa_cc_table.rda
data/goa_mf_table.rda
data/gwas_table.rda
data/hgnc_group_table.rda
data/inweb_hash.rda
data/msigdb_c1_table.rda
data/msigdb_c2_table.rda
data/msigdb_c3_table.rda
data/msigdb_c4_table.rda
data/msigdb_c5_table.rda
data/msigdb_c6_table.rda
data/msigdb_c7_table.rda
data/msigdb_h_table.rda
genoppi-v4.Rproj
inst/.DS_Store
inst/extdata/.DS_Store
inst/extdata/colors.txt
inst/extdata/colors_markers.txt
inst/shiny-examples/.DS_Store
inst/shiny-examples/myapp/.DS_Store
inst/shiny-examples/myapp/VennDiagram2020-04-19_12-26-12.log
inst/shiny-examples/myapp/VennDiagram2020-04-19_12-30-35.log
inst/shiny-examples/myapp/basic.Rmd
inst/shiny-examples/myapp/global.R
inst/shiny-examples/myapp/runApp.R
inst/shiny-examples/myapp/server.R
inst/shiny-examples/myapp/ui.R
inst/shiny-examples/myapp/www/.DS_Store
inst/shiny-examples/myapp/www/custom.css
inst/shiny-examples/myapp/www/icon_gnomad.png
inst/shiny-examples/myapp/www/icon_inweb.png
inst/shiny-examples/myapp/www/icon_scatter.png
inst/shiny-examples/myapp/www/icon_snp.png
inst/shiny-examples/myapp/www/icon_venn_a.png
inst/shiny-examples/myapp/www/test.png
inst/shiny-examples/myapp/www/welcome_guide_200415.pdf
man/accession_gene_table.Rd
man/add_genoppi_trace.Rd
man/add_hover_lines_volcano.Rd
man/add_layout_html_axes_scatterplot.Rd
man/add_layout_html_axes_volcano.Rd
man/add_line_unity.Rd
man/add_markers_search.Rd
man/add_markers_search_pathway.Rd
man/append_to_column.Rd
man/as.bait.Rd
man/assign_freq.Rd
man/bold.Rd
man/calc_fisher.Rd
man/calc_hyper.Rd
man/calc_mod_ttest.Rd
man/catf.Rd
man/check_input.Rd
man/collapse_labels.Rd
man/color_distinct.Rd
man/color_gradient.Rd
man/draw_genoppi_venn.Rd
man/enumerate_replicate_combinations.Rd
man/example_data.Rd
man/genes_snps.Rd
man/get_gene_lists.Rd
man/get_gwas_lists.Rd
man/get_inweb_list.Rd
man/get_pathways.Rd
man/get_snp_lists.Rd
man/gnomad_table.Rd
man/goa_bp_table.Rd
man/goa_cc_table.Rd
man/goa_mf_table.Rd
man/grapes-nin-grapes.Rd
man/gwas_table.Rd
man/hgnc_group_table.Rd
man/id_enriched_proteins.Rd
man/inweb_hash.Rd
man/italics.Rd
man/launch_genoppi.Rd
man/make_interactive.Rd
man/map_gene_id.Rd
man/misc.Rd
man/modify_ggplot_from_overlay.Rd
man/msigdb_c1_table.Rd
man/msigdb_c2_table.Rd
man/msigdb_c3_table.Rd
man/msigdb_c4_table.Rd
man/msigdb_c5_table.Rd
man/msigdb_c6_table.Rd
man/msigdb_c7_table.Rd
man/msigdb_h_table.Rd
man/null_omit.Rd
man/plot_overlay.Rd
man/plot_scatter_basic.Rd
man/plot_scatter_basic_all.Rd
man/plot_volcano_basic.Rd
man/read_input.Rd
man/set_names_by_dataset.Rd
man/stop_invalid_columns.Rd
man/subset_snp_loci.Rd
man/theme_genoppi.Rd
man/theme_genoppi_bar.Rd
man/to_overlay_data.Rd
man/validate_reference.Rd
man/venn_to_table.Rd
tests/.DS_Store
tests/testthat.R
tests/testthat/.DS_Store
tests/testthat/data/test.ALSgenes.nonSig.txt
tests/testthat/data/test.ALSgenes.sigCol.txt
tests/testthat/data/test.ALSgenes.txt
tests/testthat/data/test.data.txt
tests/testthat/data/test.df1.txt
tests/testthat/data/test.snps.txt
tests/testthat/functions/compare_image.R
tests/testthat/reference/.DS_Store
tests/testthat/reference/draw_venn_simple/draw_venn_simple.A1.png
tests/testthat/reference/make_interactive/make_interactive.A1.RDS
tests/testthat/reference/plot_overlay/.DS_Store
tests/testthat/reference/plot_overlay/plot_overlay.A1.png
tests/testthat/reference/plot_overlay/plot_overlay.A2.png
tests/testthat/reference/plot_overlay/plot_overlay.B1.png
tests/testthat/reference/plot_overlay/plot_overlay.B2.png
tests/testthat/result/.DS_Store
tests/testthat/result/draw_venn_simple/draw_venn_simple.A1.png
tests/testthat/result/plot_overlay/.DS_Store
tests/testthat/result/plot_overlay/plot_overlay.A1.png
tests/testthat/result/plot_overlay/plot_overlay.A2.png
tests/testthat/result/plot_overlay/plot_overlay.B1.png
tests/testthat/result/plot_overlay/plot_overlay.B2.png
tests/testthat/test.add_genoppi_trace.R
tests/testthat/test.add_hover_lines_volcano.R
tests/testthat/test.add_layout_html_axes.R
tests/testthat/test.add_line_unity.R
tests/testthat/test.add_markers_search.R
tests/testthat/test.append_to_column.R
tests/testthat/test.calc_fisher.R
tests/testthat/test.calc_hyper.R
tests/testthat/test.calc_mod_ttest.R
tests/testthat/test.check_input.R
tests/testthat/test.collapse_labels.R
tests/testthat/test.draw_venn_simple.R
tests/testthat/test.enumerate_replicate_combinations.R
tests/testthat/test.genoppi_theme.R
tests/testthat/test.get_gene_lists.R
tests/testthat/test.get_gwas_lists.R
tests/testthat/test.get_inweb_list.R
tests/testthat/test.get_pathways.R
tests/testthat/test.get_snp_lists.R
tests/testthat/test.id_enriched_proteins.R
tests/testthat/test.make_interactive.R
tests/testthat/test.map_gene_id.R
tests/testthat/test.misc.R
tests/testthat/test.package_workflow.R
tests/testthat/test.plot_overlay.R
tests/testthat/test.plot_scatter_basic.R
tests/testthat/test.read_input.R
tests/testthat/test.set_names_by_dataset.R
tests/testthat/test.subset_snp_loci.R
tests/testthat/test.venn_to_table.R
