Description Usage Arguments Value Examples
Use one-tailed hypergeometric test to calcualte overlap enrichment between proteomic data and other datasets (e.g. InWeb, gene lists, etc.)
1 | calc_hyper(df, listDf, intersectDf, bait = NULL)
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df |
data.frame containing proteomic data, with gene and significant columns |
listDf |
data.frame containing data to overlap, with listName, gene and significant columns |
intersectDf |
data.frame contaning listName and intersectN columns intersectN = vector of boolean variables indicating if total population should be intersect of the two datasets |
bait |
name of bait protein |
list of data.frame and list. Data.frame contains list_name, successInSample_count (x), sample_count (n), notSample_count (N-n), success_count (k), population_count (N), pvalue. List of lists (for each listName) contains genes names corresponding to each group (successInSample_genes, sample_genes, notSample_genes, success_genes, population_genes).
1 2 3 4 5 | ## Not run:
# an example
## End(Not run)
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