Files in frhl/genoppi-v4

genoppi

.DS_Store

.Rapp.history

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

R/.DS_Store

R/add_genoppi_trace.R R/add_hover_lines_volcano.R R/add_layout_html_axes.R R/add_line_unity.R R/add_markers_search.R R/append_to_column.R R/calc_fisher.R R/calc_hyper.R R/calc_mod_ttest.R R/check_input.R R/collapse_labels.R R/data.R R/draw_genoppi_venn.R R/enumerate_replicate_combinations.R R/get_gene_lists.R R/get_gwas_lists.R R/get_inweb_list.R R/get_pathways.R R/get_snp_lists.R R/id_enriched_proteins.R R/launch_genoppi.R R/make_interactive.R R/map_gene_id.R R/misc.R R/modify_ggplot_from_overlay.R R/plot_overlay.R R/plot_scatter_basic.R R/plot_volcano_basic.R R/read_input.R R/set_names_by_dataset.R R/stop_invalid.R R/subset_snp_loci.R R/theme_genoppi.R R/to_overlay_data.R R/validate_reference.R R/venn_to_table.R README.md

codecov.yml

data/.DS_Store

data/accession_gene_table.rda

data/example_data.rda

data/genes_snps.rda

data/gnomad_table.rda

data/goa_bp_table.rda

data/goa_cc_table.rda

data/goa_mf_table.rda

data/gwas_table.rda

data/hgnc_group_table.rda

data/inweb_hash.rda

data/msigdb_c1_table.rda

data/msigdb_c2_table.rda

data/msigdb_c3_table.rda

data/msigdb_c4_table.rda

data/msigdb_c5_table.rda

data/msigdb_c6_table.rda

data/msigdb_c7_table.rda

data/msigdb_h_table.rda

genoppi-v4.Rproj

inst/.DS_Store

inst/extdata/.DS_Store

inst/extdata/colors.txt

inst/extdata/colors_markers.txt

inst/shiny-examples/.DS_Store

inst/shiny-examples/myapp/.DS_Store

inst/shiny-examples/myapp/VennDiagram2020-04-19_12-26-12.log

inst/shiny-examples/myapp/VennDiagram2020-04-19_12-30-35.log

inst/shiny-examples/myapp/basic.Rmd inst/shiny-examples/myapp/global.R inst/shiny-examples/myapp/runApp.R inst/shiny-examples/myapp/server.R inst/shiny-examples/myapp/ui.R

inst/shiny-examples/myapp/www/.DS_Store

inst/shiny-examples/myapp/www/custom.css

inst/shiny-examples/myapp/www/icon_gnomad.png

inst/shiny-examples/myapp/www/icon_inweb.png

inst/shiny-examples/myapp/www/icon_scatter.png

inst/shiny-examples/myapp/www/icon_snp.png

inst/shiny-examples/myapp/www/icon_venn_a.png

inst/shiny-examples/myapp/www/test.png

inst/shiny-examples/myapp/www/welcome_guide_200415.pdf man/accession_gene_table.Rd man/add_genoppi_trace.Rd man/add_hover_lines_volcano.Rd man/add_layout_html_axes_scatterplot.Rd man/add_layout_html_axes_volcano.Rd man/add_line_unity.Rd man/add_markers_search.Rd man/add_markers_search_pathway.Rd man/append_to_column.Rd man/as.bait.Rd man/assign_freq.Rd man/bold.Rd man/calc_fisher.Rd man/calc_hyper.Rd man/calc_mod_ttest.Rd man/catf.Rd man/check_input.Rd man/collapse_labels.Rd man/color_distinct.Rd man/color_gradient.Rd man/draw_genoppi_venn.Rd man/enumerate_replicate_combinations.Rd man/example_data.Rd man/genes_snps.Rd man/get_gene_lists.Rd man/get_gwas_lists.Rd man/get_inweb_list.Rd man/get_pathways.Rd man/get_snp_lists.Rd man/gnomad_table.Rd man/goa_bp_table.Rd man/goa_cc_table.Rd man/goa_mf_table.Rd man/grapes-nin-grapes.Rd man/gwas_table.Rd man/hgnc_group_table.Rd man/id_enriched_proteins.Rd man/inweb_hash.Rd man/italics.Rd man/launch_genoppi.Rd man/make_interactive.Rd man/map_gene_id.Rd man/misc.Rd man/modify_ggplot_from_overlay.Rd man/msigdb_c1_table.Rd man/msigdb_c2_table.Rd man/msigdb_c3_table.Rd man/msigdb_c4_table.Rd man/msigdb_c5_table.Rd man/msigdb_c6_table.Rd man/msigdb_c7_table.Rd man/msigdb_h_table.Rd man/null_omit.Rd man/plot_overlay.Rd man/plot_scatter_basic.Rd man/plot_scatter_basic_all.Rd man/plot_volcano_basic.Rd man/read_input.Rd man/set_names_by_dataset.Rd man/stop_invalid_columns.Rd man/subset_snp_loci.Rd man/theme_genoppi.Rd man/theme_genoppi_bar.Rd man/to_overlay_data.Rd man/validate_reference.Rd man/venn_to_table.Rd

tests/.DS_Store

tests/testthat.R

tests/testthat/.DS_Store

tests/testthat/data/test.ALSgenes.nonSig.txt

tests/testthat/data/test.ALSgenes.sigCol.txt

tests/testthat/data/test.ALSgenes.txt

tests/testthat/data/test.data.txt

tests/testthat/data/test.df1.txt

tests/testthat/data/test.snps.txt

tests/testthat/functions/compare_image.R

tests/testthat/reference/.DS_Store

tests/testthat/reference/draw_venn_simple/draw_venn_simple.A1.png

tests/testthat/reference/make_interactive/make_interactive.A1.RDS

tests/testthat/reference/plot_overlay/.DS_Store

tests/testthat/reference/plot_overlay/plot_overlay.A1.png

tests/testthat/reference/plot_overlay/plot_overlay.A2.png

tests/testthat/reference/plot_overlay/plot_overlay.B1.png

tests/testthat/reference/plot_overlay/plot_overlay.B2.png

tests/testthat/result/.DS_Store

tests/testthat/result/draw_venn_simple/draw_venn_simple.A1.png

tests/testthat/result/plot_overlay/.DS_Store

tests/testthat/result/plot_overlay/plot_overlay.A1.png

tests/testthat/result/plot_overlay/plot_overlay.A2.png

tests/testthat/result/plot_overlay/plot_overlay.B1.png

tests/testthat/result/plot_overlay/plot_overlay.B2.png

tests/testthat/test.add_genoppi_trace.R tests/testthat/test.add_hover_lines_volcano.R tests/testthat/test.add_layout_html_axes.R tests/testthat/test.add_line_unity.R tests/testthat/test.add_markers_search.R tests/testthat/test.append_to_column.R tests/testthat/test.calc_fisher.R tests/testthat/test.calc_hyper.R tests/testthat/test.calc_mod_ttest.R tests/testthat/test.check_input.R tests/testthat/test.collapse_labels.R tests/testthat/test.draw_venn_simple.R tests/testthat/test.enumerate_replicate_combinations.R tests/testthat/test.genoppi_theme.R tests/testthat/test.get_gene_lists.R tests/testthat/test.get_gwas_lists.R tests/testthat/test.get_inweb_list.R tests/testthat/test.get_pathways.R tests/testthat/test.get_snp_lists.R tests/testthat/test.id_enriched_proteins.R tests/testthat/test.make_interactive.R tests/testthat/test.map_gene_id.R tests/testthat/test.misc.R

tests/testthat/test.package_workflow.R

tests/testthat/test.plot_overlay.R tests/testthat/test.plot_scatter_basic.R tests/testthat/test.read_input.R tests/testthat/test.set_names_by_dataset.R tests/testthat/test.subset_snp_loci.R tests/testthat/test.venn_to_table.R

frhl/genoppi-v4 documentation built on May 5, 2020, 7:16 a.m.