get_pathways: Retreive pathway annotations for a list of genes
In frhl/genoppi-v4: genoppi
Description
Usage
Arguments
Value
Description
Look up pathway annotations for genes using data from HGNC, GO (MF, CC, BP), or MSigDB (H,C1-C7) database.
Usage
1
get_pathways(database, genes)
Arguments
database
string ("hgnc","mf","cc","bp","h","c1","c2","c3","c4","c5","c6", or "c7")
genes
vector of gene names (genes detected in proteomic data)
Value
data.frame containing gene, pathway, (and GO.ID if appropriate) columns
frhl/genoppi-v4 documentation built on May 5, 2020, 7:16 a.m.
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Description Usage Arguments Value
Description
Look up pathway annotations for genes using data from HGNC, GO (MF, CC, BP), or MSigDB (H,C1-C7) database.
Usage
1 | get_pathways(database, genes)
|
Arguments
database |
string ("hgnc","mf","cc","bp","h","c1","c2","c3","c4","c5","c6", or "c7") |
genes |
vector of gene names (genes detected in proteomic data) |
Value
data.frame containing gene, pathway, (and GO.ID if appropriate) columns
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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