id_enriched_proteins: Identify enriched proteins

Description Usage Arguments Value

View source: R/id_enriched_proteins.R

Description

Identify enriched proteins based in input thresholds.

Usage

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id_enriched_proteins(
  df,
  logfc_dir = "positive",
  logfc_cutoff = NULL,
  p_cutoff = NULL,
  fdr_cutoff = 0.1
)

Arguments

df

data.frame contaiing logFC, pvalue, and FDR columns

logfc_dir

string indicating direction of logFC cutoff ("positive" or "negative")

logfc_cutoff

numeric value indicating logFC cutoff

p_cutoff

numeric value indicating pvalue cutoff

fdr_cutoff

numeric value indicating FDR cutoff

Value

data.frame containing df + signficanct column of boolean values indicating which df rows (proteins) are enriched


frhl/genoppi-v4 documentation built on May 5, 2020, 7:16 a.m.