add_diff_exp_color: add_diff_exp_color
In fritz616/STRINGdb_mod: STRINGdb (Search Tool for the Retrieval of Interacting proteins database)
Description
Usage
Arguments
Value
Author(s)
Description
Take in input a dataframe containing a logFC column that reports the logarithm of the difference in expression level.
Add a "color" column to the data frame such that strongly downregulated genes are colored in green and strong upregulated genes are in red.
When the down or up-regulation is instead weak the intensity of the color gets weaker as well, accordingly.
Usage
1
2
## S4 method for signature 'STRINGdb'
add_diff_exp_color(screen, logFcColStr="logFC" )
Arguments
screen
Dataframe containing the results of the experiment (e.g. the analyzed results of a microarray or RNAseq experiment)
logFcColStr
name of the colum that contains the logFC of the expression
Value
vector containing the colors
Author(s)
Andrea Franceschini
fritz616/STRINGdb_mod documentation built on March 9, 2021, 11:37 p.m.
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Description Usage Arguments Value Author(s)
Description
Take in input a dataframe containing a logFC column that reports the logarithm of the difference in expression level. Add a "color" column to the data frame such that strongly downregulated genes are colored in green and strong upregulated genes are in red. When the down or up-regulation is instead weak the intensity of the color gets weaker as well, accordingly.
Usage
1 2 | ## S4 method for signature 'STRINGdb'
add_diff_exp_color(screen, logFcColStr="logFC" )
|
Arguments
screen |
Dataframe containing the results of the experiment (e.g. the analyzed results of a microarray or RNAseq experiment) |
logFcColStr |
name of the colum that contains the logFC of the expression |
Value
vector containing the colors
Author(s)
Andrea Franceschini
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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