get_homologs_besthits: get_homologs_besthits
In fritz616/STRINGdb_mod: STRINGdb (Search Tool for the Retrieval of Interacting proteins database)
Description
Usage
Arguments
Value
Author(s)
Description
Returns the list of closest homologs (as measured by bitscore) of the given input identifiers in all STRING species or single target species.
Usage
1
2
## S4 method for signature 'STRINGdb'
get_homologs_besthits(string_ids, target_species_id=NULL)
Arguments
string_ids
a vector of STRING identifiers.
target_species_id
NCBI taxonomy identifier of the species to query for homologs (the species must be present in the STRING database)
Value
Data frame containing the best blast hits x species of the given input identifiers.
Author(s)
Andrea Franceschini
fritz616/STRINGdb_mod documentation built on March 9, 2021, 11:37 p.m.
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Description Usage Arguments Value Author(s)
Description
Returns the list of closest homologs (as measured by bitscore) of the given input identifiers in all STRING species or single target species.
Usage
1 2 | ## S4 method for signature 'STRINGdb'
get_homologs_besthits(string_ids, target_species_id=NULL)
|
Arguments
string_ids |
a vector of STRING identifiers. |
target_species_id |
NCBI taxonomy identifier of the species to query for homologs (the species must be present in the STRING database) |
Value
Data frame containing the best blast hits x species of the given input identifiers.
Author(s)
Andrea Franceschini
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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