get_graph: get_graph
In fritz616/STRINGdb_mod: STRINGdb (Search Tool for the Retrieval of Interacting proteins database)
Description
Usage
Value
Author(s)
References
See Also
Description
Return an igraph object with the STRING network (for information about iGraph visit http://igraph.sourceforge.net)
Usage
1
2
## S4 method for signature 'STRINGdb'
get_graph()
Value
igraph object with the STRING network
Author(s)
Andrea Franceschini
References
Csardi G, Nepusz T: The igraph software package for complex network research, InterJournal, Complex Systems 1695. 2006.
http://igraph.sf.net
See Also
In order to simplify the most common tasks, we do also provide convenient functions that wrap some iGraph functions.
get_interactions(string_ids) # returns the interactions in between the input proteins
get_neighbors(string_ids) # Get the neighborhoods of a protein (or of a vector of proteins) that is given in input.
get_subnetwork(string_ids) # returns a subgraph from the given input proteins
fritz616/STRINGdb_mod documentation built on March 9, 2021, 11:37 p.m.
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Description Usage Value Author(s) References See Also
Description
Return an igraph object with the STRING network (for information about iGraph visit http://igraph.sourceforge.net)
Usage
1 2 | ## S4 method for signature 'STRINGdb'
get_graph()
|
Value
igraph object with the STRING network
Author(s)
Andrea Franceschini
References
Csardi G, Nepusz T: The igraph software package for complex network research, InterJournal, Complex Systems 1695. 2006. http://igraph.sf.net
See Also
In order to simplify the most common tasks, we do also provide convenient functions that wrap some iGraph functions. get_interactions(string_ids) # returns the interactions in between the input proteins get_neighbors(string_ids) # Get the neighborhoods of a protein (or of a vector of proteins) that is given in input. get_subnetwork(string_ids) # returns a subgraph from the given input proteins
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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