remove_homologous_interactions: remove_homologous_interactions
In fritz616/STRINGdb_mod: STRINGdb (Search Tool for the Retrieval of Interacting proteins database)
Description
Usage
Arguments
Value
Author(s)
Description
With this method it is possible to remove the interactions that are composed by a pair of homologous/similar proteins, having a similarity bitscore between each other higher than a threshold.
Usage
1
2
## S4 method for signature 'STRINGdb'
remove_homologous_interactions(interactions_dataframe, bitscore_threshold = 60)
Arguments
interactions_dataframe
a data frame contaning the sorted interactions to be benchmarked. The data frame should have the following column names: proteinA, proteinB, score
bitscore_threshold
filter out pairs of homologous proteins, having a similarity bitscore higher than this parameter
Value
interactions data frame where the homologous pairs have been removed, from the input interactions' data frame
Author(s)
Andrea Franceschini
fritz616/STRINGdb_mod documentation built on March 9, 2021, 11:37 p.m.
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Description Usage Arguments Value Author(s)
Description
With this method it is possible to remove the interactions that are composed by a pair of homologous/similar proteins, having a similarity bitscore between each other higher than a threshold.
Usage
1 2 | ## S4 method for signature 'STRINGdb'
remove_homologous_interactions(interactions_dataframe, bitscore_threshold = 60)
|
Arguments
interactions_dataframe |
a data frame contaning the sorted interactions to be benchmarked. The data frame should have the following column names: proteinA, proteinB, score |
bitscore_threshold |
filter out pairs of homologous proteins, having a similarity bitscore higher than this parameter |
Value
interactions data frame where the homologous pairs have been removed, from the input interactions' data frame
Author(s)
Andrea Franceschini
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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