fasta_parse_file: Read non-redundant headers from all fasta files

In ftwkoopmans/msdap: Mass Spectrometry Downstream Analysis Pipeline

Read non-redundant headers from all fasta files

Description

note that this function replaces semicolons in fasta headers with colons (since we use semicolons as delimiters upstream)

Usage

fasta_parse_file(
  fasta_files,
  fasta_id_type = "uniprot",
  uppercase_symbols = TRUE
)

Arguments

fasta_files	array of fill paths to fasta files
fasta_id_type	fasta type, typically this is 'uniprot'
uppercase_symbols	convert all gene symbols to upper case? default: TRUE

ftwkoopmans/msdap documentation built on March 5, 2025, 12:15 a.m.