fragpipe_modseq_compose: Reconstruct modified peptide sequences from disjoint...
In ftwkoopmans/msdap: Mass Spectrometry Downstream Analysis Pipeline
View source: R/parse_fragpipe.R
fragpipe_modseq_compose R Documentation
Reconstruct modified peptide sequences from disjoint information provided in psm.tsv to facilitate cross-reference matching of between FragPipe output tables
Description
Example data @ unchopped table in this function
HQGVMVGMGQK 5M(15.9949), 8M(15.9949) 5M(15.9949) FALSE FALSE 5 15.9949
HQGVMVGMGQK 5M(15.9949), 8M(15.9949) 8M(15.9949) FALSE FALSE 8 15.9949
ATEHPEPPK N-term(42.0106) N-term(42.0106)
ATTATMATSGSAR 6M(15.9949), N-term(42.0106) 6M(15.9949)
ATTATMATSGSAR 6M(15.9949), N-term(42.0106) N-term(42.0106)
Usage
fragpipe_modseq_compose(x)
Arguments
x
psm table obtained via fragpipe_parse_psm()
Details
FragPipe documentation on modified sequences (that we here replace); https://github.com/Nesvilab/MSFragger/issues/138
ftwkoopmans/msdap documentation built on March 5, 2025, 12:15 a.m.
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View source: R/parse_fragpipe.R
| fragpipe_modseq_compose | R Documentation |
Reconstruct modified peptide sequences from disjoint information provided in psm.tsv to facilitate cross-reference matching of between FragPipe output tables
Description
Example data @ unchopped table in this function HQGVMVGMGQK 5M(15.9949), 8M(15.9949) 5M(15.9949) FALSE FALSE 5 15.9949 HQGVMVGMGQK 5M(15.9949), 8M(15.9949) 8M(15.9949) FALSE FALSE 8 15.9949 ATEHPEPPK N-term(42.0106) N-term(42.0106) ATTATMATSGSAR 6M(15.9949), N-term(42.0106) 6M(15.9949) ATTATMATSGSAR 6M(15.9949), N-term(42.0106) N-term(42.0106)
Usage
fragpipe_modseq_compose(x)
Arguments
x |
psm table obtained via |
Details
FragPipe documentation on modified sequences (that we here replace); https://github.com/Nesvilab/MSFragger/issues/138
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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