idmap_symbols: helper function to match a protein table to HGNC via gene...
In ftwkoopmans/msdap: Mass Spectrometry Downstream Analysis Pipeline
View source: R/gene_idmapping.R
idmap_symbols R Documentation
helper function to match a protein table to HGNC via gene symbols (and synonyms)
Description
typically called from export_stats_genesummary
Usage
idmap_symbols(proteins_long, hgnc, use_synonyms = TRUE)
Arguments
proteins_long
long-format data.frame with columns protein_id and symbol pairs (i.e. no semicolon-delimited values)
hgnc
HGNC lookup table from hgnc_lookuptable()
use_synonyms
boolean; use synonyms? if FALSE, only uses hgnc_symbol
ftwkoopmans/msdap documentation built on March 5, 2025, 12:15 a.m.
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View source: R/gene_idmapping.R
| idmap_symbols | R Documentation |
helper function to match a protein table to HGNC via gene symbols (and synonyms)
Description
typically called from export_stats_genesummary
Usage
idmap_symbols(proteins_long, hgnc, use_synonyms = TRUE)
Arguments
proteins_long |
long-format data.frame with columns protein_id and symbol pairs (i.e. no semicolon-delimited values) |
hgnc |
HGNC lookup table from |
use_synonyms |
boolean; use synonyms? if FALSE, only uses hgnc_symbol |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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