normalize_peptide_intensity_column: Apply an array of normalization algorithms to some intensity...

In ftwkoopmans/msdap: Mass Spectrometry Downstream Analysis Pipeline

Apply an array of normalization algorithms to some intensity column in the peptide table

Description

Apply an array of normalization algorithms to some intensity column in the peptide table

Usage

normalize_peptide_intensity_column(
  dataset,
  col_intensity,
  norm_algorithm,
  rollup_algorithm
)

Arguments

dataset	your dataset
col_intensity	intensity column in dataset$peptides tibble
norm_algorithm	array of normalization algorithm character IDs
rollup_algorithm	the algorithm for combining peptides to proteins as used in normalization algorithms that require a priori rollup from peptides to a protein-level abundance matrix (e.g. modebetween_protein). Refer to rollup_pep2prot function documentation for available options and a brief description of each

ftwkoopmans/msdap documentation built on March 5, 2025, 12:15 a.m.